"# Model Commands",,,,,,,,,,
"# Command Type","Model Name","Parent Model",,,,,,,,
"model","root",,,,,,,,,
"model","Tutorial Model","root",,,,,,,,
"model","Region A at 3 Hours","Tutorial Model",,,,,,,,
,,,,,,,,,,
"# Region Commands",,,,,,,,,,
"# Command Type","Model Name","Region Name","Region Abbreviation",,,,,,,
"region","Tutorial Model","Region A","A",,,,,,,
"region","Tutorial Model","Region B","B",,,,,,,
"region","Region A at 3 Hours","Region A","A",,,,,,,
,,,,,,,,,,
"# Interactions",,,,,,,,,,
"# Gene-Gene",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Sign","Source Region Abbrev","Target Region Abbrev",,
"general","Tutorial Model","gene","Gene 1","gene","Gene 2","positive","A","A",,
"general","Tutorial Model","gene","Gene 2","gene","Gene 3","positive","A","A",,
"general","Tutorial Model","gene","Gene 3","gene","Gene 2","positive","A","A",,
"general","Tutorial Model","gene","Gene 3","gene","Gene 4","positive","A","A",,
"general","Tutorial Model","gene","Gene 4","gene","Gene 5","positive","A","A",,
"general","Tutorial Model","gene","Gene 4","gene","Gene 6","positive","A","A",,
"general","Tutorial Model","gene","Gene 4","gene","Gene 7","positive","A","A",,
,,,,,,,,,,
"# Signals",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Factor Type","Factor Name","Signal Type","Source Region Abbrev","Target Region Abbrev"
"signal","Tutorial Model","gene","Gene 7","gene","Gene 8","gene","Gene 9","promoteSig","A","B"
,,,,,,,,,,
"# General Interactions",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Sign","Source Region Abbrev","Target Region Abbrev",,
"general","Tutorial Model","box","Maternal Input","gene","Gene 1","positive","A","A",,
"general","Tutorial Model","bare","Ubiq","gene","Gene 9","positive","B","B",,
,,,,,,,,,,
"# Gene-Gene For Submodel",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Sign","Source Region Abbrev","Target Region Abbrev",,
"general","Region A at 3 Hours","gene","Gene 2","gene","Gene 3","positive","A","A",,
"general","Region A at 3 Hours","gene","Gene 3","gene","Gene 2","positive","A","A",,
"general","Region A at 3 Hours","gene","Gene 3","gene","Gene 4","positive","A","A",,