"# Model Commands",,,,,,,,,,
"# Command Type","Model Name","Parent Model",,,,,,,,
"model","root",,,,,,,,,
"model","Tutorial Model","root",,,,,,,,
"model","Region A - 3 Hours","Tutorial Model",,,,,,,,
"model","Region B - 1 Hour","Tutorial Model",,,,,,,,
,,,,,,,,,,
"# Region Commands",,,,,,,,,,
"# Command Type","Model Name","Region Name","Region Abbreviation",,,,,,,
"region","Tutorial Model","A","A",,,,,,,
"region","Tutorial Model","B","B",,,,,,,
"region","Region A - 3 Hours","A","A",,,,,,,
"region","Region B - 1 Hour","B","B",,,,,,,
,,,,,,,,,,
"# Standard Interactions",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Sign","Source Region Abbrev","Target Region Abbrev",,
"general","Tutorial Model","gene","Gene 1","gene","Gene 2","positive","A","A",,
"general","Tutorial Model","gene","Gene 2","gene","Gene 3","positive","A","A",,
"general","Tutorial Model","gene","Gene 3","gene","Gene 2","positive","A","A",,
"general","Tutorial Model","gene","Gene 3","gene","Gene 4","positive","A","A",,
"general","Tutorial Model","gene","Gene 4","gene","Gene 5","positive","A","A",,
"general","Tutorial Model","gene","Gene 4","gene","Gene 7","positive","A","A",,
"general","Tutorial Model","box","Maternal Input","gene","Gene 1","positive","A","A",,
"general","Tutorial Model","bare","Ubiq","gene","Gene 9","positive","B","B",,
"general","Tutorial Model","box","Maternal Input 2","gene","Gene 5","positive","B","B",,
"general","Tutorial Model","box","Maternal Input 2","gene","Gene 10","positive","B","B",,
"general","Tutorial Model","box","Maternal Input 2","gene","Gene 11","positive","B","B",,
,,,,,,,,,,
"# Signals",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Factor Type","Factor Name","Signal Type","Source Region Abbrev","Target Region Abbrev"
"signal","Tutorial Model","gene","Gene 7","gene","Gene 8","gene","Gene 9","promoteSig","A","B"
,,,,,,,,,,
,,,,,,,,,,
"# Interactions For Submodels",,,,,,,,,,
"# Command Type","Model Name","Source Type","Source Name","Target Type","Target Name","Sign","Source Region Abbrev","Target Region Abbrev",,
"general","Region A - 3 Hours","gene","Gene 2","gene","Gene 3","positive","A","A",,
"general","Region A - 3 Hours","gene","Gene 3","gene","Gene 2","positive","A","A",,
"general","Region A - 3 Hours","gene","Gene 3","gene","Gene 4","positive","A","A",,
"general","Region B - 1 Hour","box","Maternal Input 2","gene","Gene 5","positive","B","B",,
"general","Region B - 1 Hour","box","Maternal Input 2","gene","Gene 10","positive","B","B",,